General Tree

Adl S.M., Bass D., Lane C.E. et al. Revisions to the classification, nomenclature, and diversity of eukaryotes. Journal of Eukaryotic Microbiology. 2018. V. 66(1). P. 4–119. https://doi.org/10.1111/jeu.12691

Cerón-Romero M. A., Maurer-Alcalá X. X., Grattepanche J. D., et al. PhyloToL: A taxon/gene-Rich phylogenomic pipeline to explore genome evolution of diverse eukaryotes. Molecular Biol[1]ogy and Evolution. 2019;36(8):1831–1842. https://doi.org/10.1093/ molbev/msz103

Burki F., Roger A. J., Brown M. W., et al. The new tree of eukaryotes. Trends in Ecology and Evolution. 2020;35(1):43–55. https://doi.org/10.1016/j.tree.2019.08.008

Loukozoa

Cavalier-Smith T. Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa. European Journal of Protistology. 2013. V. 49 (2). P. 115–178. https://doi.org/10.1016/j.ejop.2012.06.001

Strassert J. F. H., Irisarri I., Williams T.A., et al. A molecular timescale for eukaryote evolution with implications for the origin of red algalderived plastids. Nature Communications. 2021;12:1–13. https://doi.org/10.1038/s41467-021-22044-z

Amoebozoa

Tekle Y.I., Wang F., Wood F.C. et al. New insights on the evolutionary relationships between the major lineages of Amoebozoa. Sci. Rep. 2022. V. 12. P. 11173. https://doi.org/10.1038/s41598-022-15372-7

Opisthokonta

Gabaldón T., Völcker E., Torruella G. On the biology, diversity and evolution of nucleariid amoebae (Amorphea, Obazoa, Opisthokonta). Protist. 2022. V. 173 (4). P. 125895. https://doi.org/10.1016/j.protis.2022.125895

Discoba

Cavalier-Smith T. Higher classification and phylogeny of Euglenozoa. Eur J Protistol. 2016. V. 56. P. 250–276. https://doi.org/10.1016/j.ejop.2016.09.003

Ettahi K., Lhee D., Sung J.E. et al. Evolutionary history of mitochondrial genomes in Discoba, including the extreme halophile Pleurostomum flabellatum (Heterolobosea). Genome Biology and Evolution. 2021. V. 13 (2). https://doi.org/10.1093/gbe/evaa241

Cryptista

Burki F., Kaplan M., Tikhonenkov D.V.et al. Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista. Proc. Biol. Sci. 2016. V. 283 (1823). P. 20152802. https://doi.org/10.1098/rspb.2015.2802

Archeplastida

Yazaki E., Yabuki A. Imaizumi A. et al. The closest lineage of Archaeplastida is revealed by phylogenomics analyses that include Microheliella maris. Open Biology. 2022. https://doi.org/10.1098/rsob.210376

Haptista

Zlatogursky V.V., Drachko D., Klimov V. et al. On the phylogenetic position of the genus Raphidocystis (Haptista: Centroplasthelida) with notes on the dimorphism in centrohelid life cycle. Eur. J. Protistology. 2018. V. 64. P. 82–90. https://doi.org/10.1016/j.ejop.2018.03.006

Rhizaria

Cavalier-Smith T., Chao E., Lewis R. Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria. Protoplasma. 2018. V. 255. P. 1517–1574 https://doi.org/10.1007/s00709-018-1241-1

Alveolata

Muñoz-Gómez S.A., Slamovits C.H. Plastid genomes in the Myzozoa. In: Advances in botanical research,
Academic Press, 2018, pp. 55–94. https://doi.org/10.1016/bs.abr.2017.11.01

Stramenopila

Cavalier-Smith T. Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences. Protoplasma. 2017. V. 255 (1). P. 297–357. https://doi.org/10.1007/s00709-017-1147-3

Tikhonenkov D.V., Jamy M., Borodina A.S. et al. On the origin of TSAR: morphology, diversity and phylogeny of Telonemia. Open Biol. 2022. V. 2 (3). P. 210325. https://doi.org/10.1098/rsob.210325